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Abbas Nouzari Dalini

Professor

Update: 2024-12-04

Abbas Nouzari Dalini

College of Science / Faculty of Mathematics, Statistics and Computer Science

Journal Paper

  1. "Appropriate time to apply control input to complex dynamical systems"
    Ali Ebrahimi, Abbas Nouzari Dalini, Mahdi Jalili, Ali Masoudi-Nejad
    Scientific Reports, Vol. 10, No 1, pp.1-7, 2020
  2. "Efficient Generation, Ranking, and Unranking of (k, m)-Ary Trees in B-Order"
    Mehdi Amani, Abbas Nouzari Dalini
    Bulletin of the Iranian Mathematical Society, Vol. 45, No 3, pp.1-14, 2018
  3. "Block alignment: New representation and comparison method to study evolution of genomes"
    Hossein Lenjanian, Abbas Nouzari Dalini, Nazanin Hosseinkhan, Ali Masoudi-Nejad
    GENOMICS, Vol. 111, No 6, pp.1-4, 2018
  4. "A Parallel Algorithm for Generation of RNA Secondary Structures with Length n and k base-pairs"
    Shahin Mohammadi, Abbas Nouzari Dalini
    Iran Journal of Computer Science, Vol. 1, No 1, pp.1-7, 2017
  5. "Cancerouspdomains: comprehensive analysis of cancer type-specific recurrent somatic mutations in proteins and domains"
    Seirana Hashemi, Abbas Nouzari Dalini, Adrin Jalali, Ali Mohammad Banaei Moghaddam, Zahra Razaghi Moghadam Kashani
    BMC BIOINFORMATICS, Vol. 18, No 1, 2017
  6. "Network-based expression analysis reveals key genes related to glucocorticoid resistance in infant acute lymphoblastic leukemia"
    Zeinab Moosavian, Abbas Nouzari Dalini, Ronald Stam, Yasir Rahmatallah, Ali Masoudi-Nejad
    CELLULAR ONCOLOGY, Vol. 40, No 1, pp.33-45, 2016
  7. "Ranking and Unranking Algorithm for Neuronal Trees in B-order"
    Mehdi Amani, Abbas Nouzari Dalini
    Journal of Physical Science, Vol. 20, No 1, pp.19-34, 2015
  8. "Generation of neuronal trees by a new three letters encoding"
    Mehdi Amani, Abbas Nouzari Dalini, Hayedeh Ahrabiyan
    COMPUTING AND INFORMATICS, Vol. 33, No 6, pp.1428-1450, 2014
  9. "Relation Between RNA Sequences, Structures, and Shapes via Variation Networks"
    Javad Mohammadzadeh, Mohammad Ganjtabesh, Abbas Nouzari Dalini
    Iranian Journal of Biotechnology, Vol. 12, No 3, pp.58-72, 2014
  10. "Pin-Align: A New Dynamic Programming Approach to Align Protein-Protein Interaction Networks"
    Farid Amir-ghiasvand, Abbas Nouzari Dalini, Vida Momenzadeh
    Computational and Mathematical Methods in Medicine, Vol. 2014, No 1, pp.1-13, 2014
  11. "Topological Properties of RNA Variation Networks over the Space of RNA Shapes"
    Javad Mohammadzadeh, Mohammad Ganjtabesh, Abbas Nouzari Dalini
    MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY, Vol. 2, No 72, pp.501-518, 2014
  12. "Mixture of feature specified experts"
    Saeid Reza Kheradpisheh, Fatemeh Sharifizadeh, Abbas Nouzari Dalini, Mohammad Ganjtabesh, Reza Ebrahimpour
    Information Fusion, Vol. 20, No 1, 2014
  13. "Inferring gene correlation networks from transcription factor binding sites"
    Ghasem Mahdevar, Abbas Nouzari Dalini, مهدی صادقی
    GENES & GENETIC SYSTEMS, Vol. 88, No 5, pp.301-309, 2014
  14. "An Evidence-Based Combining Classifier for Brain Signal Analysis"
    Saeid Reza Kheradpisheh, Abbas Nouzari Dalini, Reza Ebrahimpour, Mohammad Ganjtabesh
    PLoS One, Vol. 9, No 1, pp.1-10, 2014
  15. "Genetic algorithm solution for partial digest problem"
    Hayedeh Ahrabiyan, Mohammad Ganjtabesh, Abbas Nouzari Dalini, Zahra Razaghi Moghadam Kashani
    International Journal of Bioinformatics Research and Applications, Vol. 6, No 9, pp.584-594, 2013
  16. "Reconstruction of an Integrated Genome-Scale CoExpression Network Reveals Key Modules Involved in Lung Adenocarcinoma"
    Gholamreza Bidkhori, Zahra Narimani, Saman Hosseini Ashtiani, Ali Moeini, Abbas Nouzari Dalini, Ali Masoudi-Nejad
    PLoS One, Vol. 8, No 7, pp.1-10, 2013
  17. "Inverse RNA Folding Solution Based on Multi-Objective Genetic Algorithm and Gibbs Sampling Method"
    Mohammad Ganjtabesh, فاطمه زارع میرک اباد, Abbas Nouzari Dalini
    EXCLI Journal, Vol. 12, No 6, pp.546-555, 2013
  18. "PreRkTAG: Prediction of RNA Knotted Structures Using Tree Adjoining Grammars"
    Hesamedin Torabi-dashti, فاطمه زارع میرک اباد, نیما اقایی پور, Hayedeh Ahrabiyan, Abbas Nouzari Dalini
    Iranian Journal of Biotechnology, Vol. 11, No 1, pp.3-13, 2013
  19. "Ranking and Unranking Algorithms for k-ary Trees in Gray Code Order"
    Fateme Ashari-ghomi , Najme Khorasani , Abbas Nouzari Dalini
    International Journal of Computational and Mathematical Sciences, Vol. 6, No 1, pp.83-88, 2012
  20. "Improving Combination Methods of Neural Classifiers Using NCL"
    Arash Iranzad , Saeed Masoudnia , Fatemeh Cheraghchi , Abbas Nouzari Dalini, Reza Ebrahimpour
    International Journal of Computer Applications in Engineering Sciences, Vol. 4, pp.679-686, 2012
  21. "Transcription Factor Binding Sites Detection by using Alignment - Based Approach"
    Ghasem Mahdevara , Mehdi Sadeghi , Abbas Nouzari Dalini
    JOURNAL OF THEORETICAL BIOLOGY, Vol. 304, No 2, pp.96-102, 2012
  22. "Low Resolution Face Recognition Using Mixture of Experts"
    Fatemeh Behjati Ardekani, Fatemeh Khademian, Abbas Nouzari Dalini, Reza Ebrahimpour
    World Academy of Science, Engineering and Technology, Vol. 56, No 1, pp.879-883, 2011
  23. "On the Solution of the towers of Hanoi problem"
    Abbas Nouzari Dalini, Comfar Badamchi , Hayedeh Ahrabiyan
    World Academy of Science Engineering and Technology, Vol. 7, No 1, pp.5-8, 2011
  24. "Tag SNP selection via a genetic algorithm"
    Ghasem Mahdevar , Javad Zahiri , Mehdi Sadeghi , Abbas Nouzari Dalini, Hayedeh Ahrabiyan
    JOURNAL OF BIOMEDICAL INFORMATICS, Vol. 43, No 5, pp.800-804, 2010
  25. "A new algorithm for generation of different types of RNA"
    Ehsan Seyedi Tabari , Hayedeh Ahrabiyan, Abbas Nouzari Dalini
    INTERNATIONAL JOURNAL OF COMPUTER MATHEMATICS, Vol. 87, No 6, pp.1197-1207, 2010
  26. "Ranking and Unranking Algorithms for Loopless Generation of t - ary Trees"
    Amin Ahmadi Adl , Abbas Nouzari Dalini, Hayedeh Ahrabiyan
    Logic Journal of the IGPL, Vol. -, 2010
  27. "Kavosh a new algorithm for finding network motifs"
    Zahra Razaghi Moghadam Kashani, Hayedeh Ahrabiyan, Elahe Allahi, Abbas Nouzari Dalini, الناز صابری انصاری , سحر اسدی , شاهین محمدی, Ali Masoudi-Nejad
    BMC BIOINFORMATICS, Vol. 10, No 318, 2009
  28. "Molecular Solution for Double and Partial Digest Problems in Polynomial Time"
    Hayedeh Ahrabiyan, Mohammad Ganjtabesh, Abbas Nouzari Dalini
    COMPUTING AND INFORMATICS, Vol. 58, No 5, pp.599-618, 2009
  29. "RNAComp A new mehod for RNA secondary struture alignment"
    Fatemeh Zare- Mirakabad, Mahdi Sadeghi , Hayedeh Ahrabiyan, Abbas Nouzari Dalini
    MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY, Vol. 61, No 1, pp.789-816, 2009
  30. "Finding Motifs Based on Suffix Trie"
    Fatemeh Zare Mirakabad , Pooya Davoodi , H Ahrabian , Abbas Nouzari Dalini, Mehdi Sadeghi , Bahram Goliaei
    Advanced Modeling and Optimization, Vol. 11, No 2, pp.177-194, 2009
  31. "A DNA STICKER ALGORITHM FOR SOLVING N - QUEEN PROBLEM"
    Hayedeh Ahrabiyan, Ali Mirzaei , Abbas Nouzari Dalini
    International Journal of Computer Science and Applications, Vol. 5, No 2, pp.12-22, 2008
  32. "Parallel Generation of P-sequences"
    Hayedeh Ahrabiyan, Abbas Nouzari Dalini
    Journal of Science University of Tehran, Vol. 33, No 3, pp.1-5, 2008
  33. "Simulating Add Operation by DNA Finite Splicing Systems"
    Hayedeh Ahrabiyan, Mohammad Ganjtabesh, Abbas Nouzari Dalini
    International Journal of Applied Mathematics, Vol. 20, No 6, pp.827-841, 2007
  34. "Parallel generation of t-ary trees in A-order"
    Hayedeh Ahrabiyan, Abbas Nouzari Dalini
    COMPUTER JOURNAL, Vol. 16, No 2, pp.169-173, 2007
  35. "Parallel Generation of t-ary trees"
    Hayedeh Ahrabiyan, Abbas Nouzari Dalini
    Journal of Sciences, Islamic Republic of Iran, Vol. 16, No 2, pp.169-173, 2007
  36. "Parallel Generation of the Biological Trees."
    Hayedeh Ahrabiyan, Abbas Nouzari Dalini, Zahra Razaghi Moghadam Kashani, فاطمه زارع میرک اباد
    Advanced Modeling and Optimization, Vol. 9, No 1, pp.1-14, 2007
  37. "Parallel Generation of t-ary Trees with Ballot-sequences"
    Abbas Nouzari Dalini, Hayedeh Ahrabiyan
    JOURNAL OF DISCRETE MATHEMATICAL SCIENCES & CRYPTOGRAPHY, Vol. 9, No 1, pp.225-234, 2006
  38. "A New DNA Implementation of Finite State Machines"
    Abbas Nouzari Dalini, Elahe Allahi, Hayedeh Ahrabiyan, Mohammad Ronaghi
    International Journal of Computer Science and Applications, Vol. 3, No 1, pp.51-60, 2006
  39. "Adaptive Generation of t-ary Trees in Parallel"
    H Ahrabian , Abbas Nouzari Dalini
    Advanced Modeling and Optimization, Vol. 8, No 1, pp.19-28, 2006
  40. "Parallel generation of binary trees in A-order"
    Hayedeh Ahrabiyan, Abbas Nouzari Dalini
    PARALLEL COMPUTING, Vol. 31, No 1, pp.948-955, 2005
  41. "DNA algorithm for an unbounded fan-in boolean circuit"
    Hayedeh Ahrabiyan, Mohammad Ganjtabesh, Abbas Nouzari Dalini
    BIOSYSTEMS, Vol. 82, No 1, pp.52-60, 2005
  42. "Gray Code Algorithm for Listing k-ary Trees"
    Hayedeh Ahrabiyan, Abbas Nouzari Dalini, E Salehi
    Studies in Informatics and Control, Vol. 13, No 4, pp.243-253, 2004
  43. "DNA simulation of nand boolean circuits"
    Hayedeh Ahrabiyan, Abbas Nouzari Dalini
    Advanced Modeling and Optimization, Vol. 6, No 2, pp.33-41, 2004
  44. "Generation of binary tree in B-order from (0-1) sequences"
    Abbas Nouzari Dalini, Hayedeh Ahrabiyan
    Malaysian Journal of Computer Science, Vol. 17, No 1, pp.24-31, 2004
  45. "Generating Binary trees in B-order and Ballot order"
    Hayedeh Ahrabiyan, Abbas Nouzari Dalini
    Amirkabir (Journal of Science and Technology), Vol. 14, No 56, pp.270-276, 2003
  46. "Generation of t-ary trees woth Ballot sequences"
    Hayedeh Ahrabiyan, Abbas Nouzari Dalini
    INTERNATIONAL JOURNAL OF COMPUTER MATHEMATICS, Vol. 80, No 10, pp.1243-1249, 2003
  47. "On the generation of P - sequences"
    Abbas Nouzari Dalini, Hayedeh Ahrabiyan
    Advanced Modeling and Optimization, Vol. 5, No 1, pp.38-27, 2003
  48. "Parallel algorithms for minimum spanning tree problem"
    Hayedeh Ahrabiyan, Abbas Nouzari Dalini
    INTERNATIONAL JOURNAL OF COMPUTER MATHEMATICS, Vol. 79, No 4, pp.448-441, 2002
  49. "On the generation of binary trees in A-order"
    Abbas Nouzari Dalini, Hayedeh Ahrabiyan
    INTERNATIONAL JOURNAL OF COMPUTER MATHEMATICS, Vol. 71, No 3, pp.351-357, 1999
  50. "On the generation of binary trees from (0-1) codes"
    Hayedeh Ahrabiyan, Abbas Nouzari Dalini
    INTERNATIONAL JOURNAL OF COMPUTER MATHEMATICS, Vol. 69, No 1, pp.245-251, 1998
  51. "Trading signed designs and some new 4 - 12,5,4 designs"
    G B Khosrovshahi , Abbas Nouzari Dalini, R Torabi
    DESIGNS CODES AND CRYPTOGRAPHY, Vol. 11, pp.279-288, 1997
  52. "Some simple and automorphism-free 2 - (15,5,4) designs"
    Gb Khosrovshahi , Abbas Nouzari Dalini, R Torabi
    JOURNAL OF COMBINATORIAL DESIGNS, Vol. 3, No 4, pp.285-292, 1995
  53. "The review on computer brain interfaces"
    Saeed Reza Kheradpisheh, Abbas Nouzari Dalini, Mohammad Ganjtabesh
    Computing Science Journal, Vol. 3, No 1, pp.17-29, 2017
  54. "An algorithm for haplotype........"
    Hayedeh Ahrabiyan, مهدی صادقی , جواد ظهیری , قاسم مهدور , Abbas Nouzari Dalini
    Journal Of Sciences, Vol. 34, No 3, pp.75-79, 2008

Conference Paper

  1. "Identification of Osteogenic Peptides Using Machine Learning Approach"
    Maryam Ghobakhloo, Mohammad Taheri Ledari, Abbas Nouzari Dalini, Bahman Zeinali
    Bringing Molecular Structure to Life: 50 Years of the PDB, 2021
  2. "Modeling the protein decomposition problem using neural networks"
    Fatemeh Sarvi, Mehdi Sadeghi, Abbas Nouzari Dalini
    The 6 th Conference on Bioinformatics, 2016
  3. "Inferring gene regulatory network from gene expression data"
    Masoud Molayem, Abbas Nouzari Dalini, Mehdi Sadeghi
    The 6 th Conference on Bioinformatics, 2016
  4. "Generation, Ranking and Unranking of Ordered Trees with Degree Bounds"
    Mehdi Amani, Abbas Nouzari Dalini
    Eleventh International Workshop on Developments in Computational Models, 2015
  5. "Generation of neuronal trees coded by three letters"
    Abbas Nouzari Dalini, Hayedeh Ahrabiyan, Mehdi Amani
    1th Iranian Conference on Algebraic Graph Theory, 2011
  6. "A new polynomial canonical form of graphs"
    Mahdi Amani, Farrokh Amirghiasvand, Hayedeh Ahrabiyan, Abbas Nouzari Dalini, Hassan Yousefi Azari Nejad
    1th Iranian Conference on Algebraic Graph Theory and 2th Conference on Chemical Graph Theory, 2011
  7. "MSS-RNA: Make a Sequence for a Given RNA Secondary Structure based on Genetic Algorithm and Gibbs Sampling Method"
    Mohammad Ganjtabesh, Hayedeh Ahrabiyan, Abbas Nouzari Dalini, فاطمه زارع میرک اباد
    International Conference on Operations Research and Optimization, 2011
  8. "Using NCL an Effective Way to Improve Combination Methods of Neural Classifiers"
    Arash Iranzad , Saeed Masoudnia , Fatemeh Cheraghchi , Abbas Nouzari Dalini, Reza Ebrahimpour
    International Conference on Soft Computing and Pattern Recognition, 2010
  9. "A Fast GRAPH Query Algorithm in Biological Network"
    Sepedeh Pashami , Farid Amir-Ghiasvand , Hayedeh Ahrabiyan, Abbas Nouzari Dalini
    3th Iranian Conference on Bioinformatics, 2010
  10. "Motif Search in DNA Sequences Using Fuzzy Logic"
    Sara Mohammadi-Achajeloii , Hayedeh Ahrabiyan, Fatemeh Zare-Mirakabad , Abbas Nouzari Dalini
    3th Iranian Conference on Bioinformatics, 2010
  11. "Motif Finding in Biological Sequences Using Neural Networks"
    Negin Najafi , Fatemeh Zare-Mirakabad , Hayedeh Ahrabiyan, Abbas Nouzari Dalini
    3th Iranian Conference on Bioinformatics, 2010
  12. "Finding Motif in DNA Sequences Using Hidden Markov Model"
    Abbas Nouzari Dalini, Shahrzad Shaterzadeh-Oskuei , Hayedeh Ahrabiyan, Fatemeh Zare-Mirakabad
    3th Iranian Conference on Bioinformatics, 2010
  13. "SA-PSOMF: An Improved PSO-Based Algorithm for Pattern Discovery with Simulated Annealing"
    Abbas Nouzari Dalini, Fatemeh Zare-Mirakabad , Hayedeh Ahrabiyan, Somaeh Hashemifar
    3th Iranian Conference on Bioinformatics, 2010
  14. "Informative SNP Selection by Particle Swarm Optimization"
    Ghasem Mahdevar , Javad Zahiri , مهدی صادقی, Hayedeh Ahrabiyan, Abbas Nouzari Dalini
    3th Iranian Conference on Bioinformatics, 2010
  15. "PSOMF An algorithm for pattern discovery using PSO"
    Fatemeh Zare-Mirakabad , Hayedeh Ahrabiyan, مهدی صادقی, Javad Mohammadzadeh , Somayeh Hashemifar , Abbas Nouzari Dalini, Bahram Goliaei
    Third IAPR International Conference on Pattern Recognition in Bioinformatics PRIB, 2008
  16. "Alignment of protein-ptotein interaction networks by using genetic algorithm"
    زهرا رزاقی مقدم کاشانی, Hayedeh Ahrabiyan, Abbas Nouzari Dalini, سحر اسدی, افشین احمدیان, Ali Masoudi-Nejad
    The 2th iranian conference on bioinformatics, 2008
  17. "A novel and efficient algorithm for finding network motifs"
    زهرا رزاقی مقدم کاشانی, Hayedeh Ahrabiyan, افشین احمدیان, Ali Masoudi-Nejad, Abbas Nouzari Dalini, الناز انصاری صابری, سحر اسدی, شاهین محمدی
    The 2th iranian conference on bioinformatics, 2008
  18. "An efficient dynamic programming algorithm for hplotype block partitioning"
    جواد ظهیری, قاسم مهدور, جواد محمد زاده, Hayedeh Ahrabiyan, مهدی صادقی, Abbas Nouzari Dalini
    The 2th iranian conference on bioinformatics, 2008
  19. "A Parallel algorithm for finding network motifs"
    زهرا رزاقی مقدم کاشانی, Hayedeh Ahrabiyan, Abbas Nouzari Dalini, الناز انصاری صابری, شاهین محمدی, افشین احمدیان, Ali Masoudi-Nejad
    The 2th iranian conference on bioinformatics, 2008
  20. "Finding motifs in promoter regions based on suffix tree"
    فاطمه زارع میرک اباد, پویا داودی, Hayedeh Ahrabiyan, Abbas Nouzari Dalini, بهرام گولیایی
    The 2th iranian conference on bioinformatics, 2008
  21. "Solving longest path problem using molecular programming"
    Hayedeh Ahrabiyan, M Ganjtabesh, A Khanteymoori, Abbas Nouzari Dalini
    2th National Computer Conference, 2003
  22. "A new DNA implementation of finite state machines"
    Hayedeh Ahrabiyan, E Elahi, MR Kangavari, Abbas Nouzari Dalini
    31st Iranian Mathmaatics Conference, 2001
  23. "Inrerence mechanisms based on DNA computation"
    Hayedeh Ahrabiyan, E Elahi, MR Kangavari, Abbas Nouzari Dalini
    The first Iranian Biochemistry and Biophysics conference, 2001
  24. "New Algorithm for the tower of Honoi problem"
    Hayedeh Ahrabiyan, C Badamchi, Abbas Nouzari Dalini
    The First International seminar on Graph,combinatoris ,computation Algorithms and Application, 2001
  25. "A new algorithm for the generation of binary trees in A- order"
    Abbas Nouzari Dalini, Hayedeh Ahrabiyan
    27th Annual Iranian Mathematics Conference, 1996
  26. "Ranking and unranking of t-ary trees"
    Mehrdad Farrokhnejad, Abbas Nouzari Dalini
    The 22nd National CSI Computer Conference of Iran computer Society, 2017
  27. "A new algorithm for phylogenic trees reconstruction"
    Somaieh Molaei, Abbas Nouzari Dalini, Naslolah Moghadam Chalkari
    The first national student conference on biotechnology, 2012
  28. "A new algorithm for reconstruction haplotype in MEC model"
    مهدی صادقی, Hayedeh Ahrabiyan, Abbas Nouzari Dalini, جواد محمد زاده, محمد صادق شیخانی, جواد ظهیری
    The 14th Iranian congress on biomedical engineering, 2008
  29. "An optimal algorithm for finding motif in biologival networks"
    Hayedeh Ahrabiyan, زهرا رزاقی مقدم کاشانی, Ali Masoudi-Nejad, Abbas Nouzari Dalini
    The 5th national biotechnology congress of Iran, 2007
  30. "Tag SNP selection using Genetic algorithm"
    قاسم مهدور, Hayedeh Ahrabiyan, مهدی صادقی, Abbas Nouzari Dalini
    The 5th national biotechnology congress of Iran, 2007
  31. "Haplotype reconstruction using k-mean algorithm"
    جواد محمد زاده, Abbas Nouzari Dalini, مهدی صادقی, Hayedeh Ahrabiyan, محمد صادق شیخانی, سمیه سادات هاشمی فر
    The 5th national biotechnology congress of Iran, 2007
  32. "Neural networks clustering method for Haplotype reconstruction"
    جواد محمد زاده, Abbas Nouzari Dalini, Hayedeh Ahrabiyan, محمد حسین معین زاده
    The 5th national biotechnology congress of Iran, 2007
  33. "Parallel Comparison of coding DNA"
    سیدحسین علوی سلطانی , Abbas Nouzari Dalini, Hayedeh Ahrabiyan
    The 5th national biotechnology congress of Iran, 2007
  34. "RNA secondary structure comparison"
    فاطمه زارع میرک اباد, Abbas Nouzari Dalini, Hayedeh Ahrabiyan, مهدی صادقی
    The 5th national biotechnology congress of Iran, 2007
  35. "Dyad motif finding using Genetic Algorithm"
    سمیه هاشمی فر, مهدی صادقی, Bahram Golyaei, Abbas Nouzari Dalini, Hayedeh Ahrabiyan, فاطمه زارع میرک اباد
    The 5th national biotechnology congress of Iran, 2007
  36. "Clustering plant’s genetic information via Neural Networks"
    Hayedeh Ahrabiyan, Abbas Nouzari Dalini, Hesam Torabi Dashti, Nima Aghaeipour, Daryanaz Dargahi
    1 st Iran Data mining conference, 2007