Hamid Pezeshk

Journal Paper

1. "A parametric empirical Bayes (PEB) approach for estimating maize progress percentage at field scale"
   Mahdi Ghamghami, Nozar Ghahreman, Parviz Irannejad, Hamid Pezeshk
   AGRICULTURAL AND FOREST METEOROLOGY, Vol. 281, No 1, 2020
2. "A Network-based Comparison between Molecular Apocrine Breast Cancer Tumor and Basal and Luminal Tumors by Joint Graphical Lasso"
   Maryam Shahdoost, حسین محجوب , Hamid Pezeshk, مهدی صادقی
   IEEE-ACM Transactions on Computational Biology and Bioinformatics, Vol. 1, No 1, pp.1-1, 2019
3. "MSeq-CNV: accurate detection of Copy Number Variation from Sequencing of Multiple samples"
   Seyyed Amir Malek Pour, Hamid Pezeshk, Mehdi Sadeghi
   Scientific Reports, Vol. 22, No 15, 2018
4. "Denoising of genetic switches based on Parrondo’s paradox Atiyeh Fotoohinasab a, Emad Fatemizadeh b, Hamid Pezeshk c,d,"
   Hamid Pezeshk
   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, Vol. 493, No 4371, pp.410-420, 2018
5. "Some node ordering methods for k2 algorithm"
   رزا اقدم , وحید رضایی تبار, Hamid Pezeshk
   computational intelligence, Vol. 34, No 3, pp.1-17, 2018
6. "Parrondo's Paradox for Games with Three Players"
   نسیم اجلالی , Hamid Pezeshk, I Chaubey , Mehdi Sadeghi
   Spectrum Research Repository (Concordia University), Vol. 1, No 1, pp.1-18, 2018
7. "F-MAP: A Bayesian approach to infer the gene regulatory network using external hints"
   Maryam Shahdoost, Hamid Pezeshk, حسین محجوب , Mehdi Sadeghi
   PLoS One, Vol. 9, No 12, 2017
8. "Task modulates functional connectivity networks in free viewing behavior"
   Hossein Seidkhani, Andry R. Nikolaev, Radha Nila Meghanathan, Hamid Pezeshk, Ali Masoudi Nejad, Cees Van Leeuwen
   NEUROIMAGE, Vol. 159, pp.289-301, 2017
9. "Stochastic Cell Fate and Longevity of Offspring"
   Faezeh Dorri, Hamid Pezeshk, Mehdi Sadeghi
   Cell Journal, Vol. 19, No 3, pp.343-351, 2017
10. "Optimization of electrospinning parameters for polyacrylonitrile-MgO nanofibers applied in air filtration"
    Farideh Golbabaei, Somaye Farhang Dehghan, Bozorgmehr Maddah, Masoud Latifi, Hamid Pezeshk, Mahdi Hasanzadeh, Farhang Akbar Khanzadeh
    JOURNAL OF THE AIR & WASTE MANAGEMENT ASSOCIATION, Vol. 66, No 9, pp.912-921, 2016
11. "Some node ordering methods for the K2 algorithm"
    رزا اقدم , وحید رضایی تبار, Hamid Pezeshk
    COMPUTATIONAL INTELLIGENCE, Vol. 111, No 111, 2016
12. "PSE-HMM: genome-wide CNV detection from NGS data using an HMM with Position-Specific Emission probabilities"
    Seyyed Amir Malek Pour, Hamid Pezeshk, Mehdi Sadeghi
    BMC BIOINFORMATICS, Vol. 18, No 1, pp.2-11, 2016
13. "A mixed Bayesian/ Frequentist approach in sample size determination problem for clinical trials"
    Maryam Bideli, John Gittins , Hamid Pezeshk
    Progress in Biological Sciences, Vol. 6, No 1, pp.1-10, 2016
14. "MGP-HMM: Detecting genome-wide CNVs using an HMM for modeling mate pair insertion sizes and read counts"
    Seyyed Amir Malek Pour, Hamid Pezeshk, Mehdi Sadeghi
    MATHEMATICAL BIOSCIENCES, Vol. 279, No 279, pp.53-62, 2016
15. "ESTIMATION OF SOMATIC CELL COUNT,AS GOLD STANDARD TO DETECT SUBCLINICAL MASTITIS IN DROMEDARY CAMEL"
    Amir Niasari-naslaji, Hamid Pezeshk, A.b Atakpour, S Ghafari, Peyman Nickchi, S Safi, S.h Shirazi Beheshtiha, H Arabha, R Samiei, M Amjadi, A.a Haji Moradlou, I Narimani, Ali Akbar Moosavi Movahhedi
    JOURNAL OF CAMEL PRACTICE AND RESEARCH, Vol. 23, No 1, pp.175-178, 2016
16. "Increased robustness of early embryogenesis through collective decision-making by key transcription factors"
    Ali Sharifi- Zarchi, Mehdi Totonchi, Keynoush Khaloughi, Razieh Karamzadeh, Marcos J.arauzo -bravo, Hossein Baharvand, Ruzbeh Tusserkani, Hamid Pezeshk, Hamidreza Chitsaz, Mehdi Sadeghi
    BMC Systems Biology, Vol. 9, No 1, 2015
17. "Identification and Prioritization Genes Related to Familial Hypercholesterolemia Quantitative Trait Loci Using Gene Ontology and Protein Interaction Networks"
    Ali Kazemi-pour, Bahram Golyaei, Hamid Pezeshk, Behjat Kalantari- Kalantari Khandani
    Research in Molecular Medicine (RMM), Vol. 3, No 1, pp.16-21, 2015
18. "Protein Complex Discovery by Interaction Filtering from Protein Interaction Networks Using Mutual Rank Coexpression and Seqence Similarity"
    Ali Kazemi-pour, Bahram Golyaei, Hamid Pezeshk
    Biomed Research International, Vol. 2015, No 2015, pp.1-7, 2015
19. "Evaluation of the Effective Factors on Profit Efficiency in Branches of Sina Bank"
    Hamid Pezeshk, Reza Tehrani
    Academic Journal of Accounting and Economics Researches, Vol. 3, No 3, pp.316-326, 2014
20. "An Optimization Approach to Calculating Sample Sizes with Binary Responses"
    Hamid Pezeshk, Paul Marriott , واحد معروفی
    JOURNAL OF BIOPHARMACEUTICAL STATISTICS, Vol. 24, No 2, pp.715-731, 2014
21. "ProDomAs, protein domain assignment algorithm using center-based clustering and independent dominating set"
    Elnaz Saberi Ansari, Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi
    Proteins: Structure, Function, and Bioinformatics, Vol. 82, No 9, pp.1937-1946, 2014
22. "Generalized Baum- Welch Algorithm Based on the Similarity between Seguences"
    Vahid Rezaei, Hamid Pezeshk, Horacio Perez Sa' Nchez
    PLoS One, Vol. 8, No 12, 2013
23. "SSP: An interval integer linear programming for de novo transcriptome assembly and isoform discovery of RNA-seq reads"
    مهدی صادقی, Hamid Pezeshk, چنگیز اصلاح چی, Zhaleh Safikhani
    GENOMICS, Vol. 102, No 5, pp.507-514, 2013
24. "Assignment of Protein Sequences to Protein Family Profiles Using Spatial Statistics"
    Vahid Rezaei, Hamid Pezeshk, Mehdi Sadehghi, Changiz Eslahchi
    MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY, Vol. 69, No 1, pp.7-24, 2013
25. "A Clustering Approach for Estimating Parameters of a Profile Hidden Markov Model"
    Hamid Pezeshk
    International Journal of Data Mining and Bioinformatics, Vol. 8, No 1, pp.66-82, 2013
26. "Optimizing aeration rates for minimizing membrane fouling and its effect on sludge characteristics in a moving bed membrane bioreactor"
    Yuosef Rahimi , Ali Torabiyan, Naser Mehrdadi, Mehran Habibi Rezaei, Hamid Pezeshk, Gholam Reza Nabi Bidhendi
    JOURNAL OF HAZARDOUS MATERIALS, Vol. 186, pp.1097-1102, 2011
27. "Sample Size Determination in Clinical Trials"
    Hamid Pezeshk, Jc Gittins
    Perspect Clin Res, Vol. 1, No 2, pp.67-69, 2010
28. "A Bayesian cost - benefit approach to the determination of Sample Size in clinical trials"
    T Kikuchi , Hamid Pezeshk, Jc Gittins
    STATISTICS IN MEDICINE, Vol. 27, No 1, pp.82-68, 2008
29. "A tale of two symmetrical tails : Structural and functional characteristics of palindromes in proteins"
    Armita Sheari , Mehdi Kargar , Ali Katanforoush , Shahriar Arab , Mehdi Sadeghi , Hamid Pezeshk, Changiz Eslahchi , Sayed Amir Marashi
    BMC BIOINFORMATICS, Vol. 9, 2008
30. "The Performacnes of Chi - square Test and Complexity Measures for Signal Recognition in Biological Sequences"
    L Pirhaji , M Kargar , A Sheari , H Poormohammadi , M Sadeghi , Hamid Pezeshk, Changiz Eslahchi
    JOURNAL OF THEORETICAL BIOLOGY, Vol. 251, No 2, pp.387-380, 2007
31. "Beta - sheet capping : signals that initiate and terminate beta - sheet formation"
    F Farzadfard , N Gharaei , Hamid Pezeshk, Sa Marashi
    JOURNAL OF STRUCTURAL BIOLOGY, Vol. 161, No 1, pp.101-110, 2007
32. "Haplotyping Problem :A Clustering Approach"
    Changiz Eslahchi , Mehdi Sadeghi , Hamid Pezeshk, Mehdi Kargar , Hadi Poormohammadi
    AMERICAN JOURNAL OF PHYSICS, Vol. 936, No 1, pp.185-190, 2007
33. "Adaptation of proteins to different environments : a comparison of proteome structural properties in Bacillus subtilis and Escherichia coli"
    Seyed Amir Marashi , Reza Behrouzi , Hamid Pezeshk
    JOURNAL OF THEORETICAL BIOLOGY, Vol. 244, No 1, pp.127-132, 2007
34. "The influence of deposit control additicves on exhaust CO and HC emissions from gasoline engines ( case study : Tehran )"
    Ali Daryabeigi Zand , Gholamreza Nabi Bidhendi , Ali Reza Mikaeili , Hamid Pezeshk
    TRANSPORTATION RESEARCH PART D-TRANSPORT AND ENVIRONMENT, Vol. 12, No 3, pp.194-189, 2007
35. "the influance of deposit control additives on nitrpgen oxides emissions from spark ignition engines case study : tehran"
    Gholam Reza Nabi Bidhendi, Ali Daryabeygi Zand , Am Tabrizi , Hamid Pezeshk, Akbar Baghvand
    Pakistan Journal of Biological Sciences, Vol. 10, No 8, pp.1353-1349, 2007
36. "The Influience of Deposit control Additives on Nitrogen Oxides Emissions from Spark Ignition Engines"
    Gn Bidhendi , Daryabeigi Zand , Mikaekili Tabrizi , Hamid Pezeshk, Akbar Baghvand
    Pakistan Journal of Biological Sciences, Vol. 10, No 8, pp.1349-1353, 2007
37. "THE INFLUENCE OF DEPOSIT CONTROL ADDITIVES ON NITROGEN OXIDES EMISSIOON FROM SPARK IGNITION NENGINES"
    Gn Bidhendi , Ad Zand , Am Tabrizi , Hamid Pezeshk, Akbar Baghvand
    Pakistan Journal of Biological Sciences, Vol. 10, No 8, pp.1349-1353, 2007
38. "Bayesian approach to determine the number of subsequent users of a new treatment"
    Hamid Pezeshk, John Gittins
    STATISTICAL METHODS IN MEDICAL RESEARCH, Vol. 15, No 6, pp.585-592, 2006
39. "Impact of RNA structure on the prediction of donor and acceptor splice sites"
    Sayed Amir Marashi , Changiz Eslahchi , Hamid Pezeshk, Mehdi Sadeghi
    BMC BIOINFORMATICS, Vol. -, pp.1-8, 2006
40. "A Cost - benefit approach to the amount of experimentation in clinical trials"
    Hamid Pezeshk, John Gittins , John Gittins
    DRUG INFORMATION JOURNAL, Vol. 40, No 4, pp.411-407, 2006
41. "Spatial Distribution of Fractures in the Asmari Formation of Iran in Subsurface Environment : Effect of Lithology and Petrophysical Properties"
    Masoud Nemati , Hamid Pezeshk
    Natural Resources Research, Vol. 14, No 4, pp.316-305, 2005
42. "A Fully Bayesian Sample Size Determination for Inference on the Difference of two Binomial Proportion"
    Hamid Pezeshk, Vahed Maroufy
    IRANIAN INTERNATIONAL JOURNAL OF SCIENCE, Vol. 6, No 2, pp.203-221, 2005
43. "Bayesian techniques for sample size determination in clinical trials : a short review"
    Hamid Pezeshk
    STATISTICAL METHODS IN MEDICAL RESEARCH, Vol. 16, No 6, pp.489-504, 2003
44. "A decision theoretic approach to sample size determination in clinical trials"
    Jc Gittins , Hamid Pezeshk
    JOURNAL OF BIOPHARMACEUTICAL STATISTICS, Vol. 12, No 4, pp.535-551, 2002
45. "How Many Subjects – A Bayesian Approach to the Design of a Clinical Trial"
    Hamid Pezeshk
    IRANIAN INTERNATIONAL JOURNAL OF SCIENCE, Vol. 3, No 1, pp.127-133, 2002
46. "A FULLY BAYESIAN APPROACHTO CALCULATING SAMPLE SIZES FOR CLINICAL TRIALS WITH BINARY RESPONSE"
    Hamid Pezeshk, John Gittins
    DRUG INFORMATION JOURNAL, Vol. 36, No 1, pp.143-150, 2002
47. "A Behavioural Bayes Method for Determining the Size of a Clinical Trial"
    John Gittins , Hamid Pezeshk
    DRUG INFORMATION JOURNAL, Vol. 34, No 2, pp.355-363, 2000
48. "How Large Should a Clinical Trial be The Statistician"
    Hamid Pezeshk, John Gittins
    The journal of the institute of wood science, Vol. 49, No 2, pp.177-187, 2000
49. "A Behavioural Bayesian Method for Sample Size Determination in Clinical Trials"
    John Gittins , Hamid Pezeshk
    International Workshop on Objective Bayesian Methodology, Valencia, Vol. -, pp.1-10, 2000
50. "The Car and the Goats"
    Hamid Pezeshk
    Culture and Math, Vol. 99, No 1, pp.72-79, 1994
51. "A Shock Model Based on the Atoms of a Poisson Random Measure"
    Hamid Pezeshk, Ar Soltani
    Bulletin of the Iranian Mathematical Society, Vol. 17, No 1, pp.55-66, 1990
52. "The Role and Importance of Genome Sequencing in Prediction of Cancer Risk"
    Hamid Pezeshk, Mehdi Mohammad Sadeghi
    International Journal of Biotechnology and Bioengineering, Vol. 11, 1396
53. "DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism"
    Ali Sharifi-zarchi, Daniela Gerovska, Kenjiro Adachi, مهدی توتونچی, Hamid Pezeshk, Ryan J. Taft, Hans R. Scholer, Hamidreza Chitsaz, Mehdi Sadeghi, Hossein Baharvand, Marcos J. Arauzo Bravo
    BMC GENOMICS, Vol. 18, No 12, 2017
54. "فلسفه آمار ( 2 )"
    Hamid Pezeshk
    نشر ریاضی, Vol. 15, No 2, pp.56-66, 2006
55. "طراحی و تبیین مدلی برای توسعه دانشگاه مجازی ایران"
    Amir Manian, غلامعلی منتظر , Hamid Pezeshk, Mohammad Mousakhani
    فرهنگ مدیریت, Vol. 3, No 10, pp.5-34, 2005
56. "رهیافت بیز برای تعیین اندازه نمونه"
    Hamid Pezeshk
    Journal Of Sciences, Vol. 30, No 1, 2004
57. "استفاده از روش بیزی در تعیین اندازه نمونه برای آزمایشی در ارتباط با تفاضل پارامترهای دوتوزیع دوجمله ای غیرمستقل"
    واحد معروفی , Hamid Pezeshk
    نشریه دانشجویی آمار (ندا), Vol. 3, No 1, 1732
58. "تعیین اندازه ی نمونه ی یک آزمایه با استفاده از روش لیندلی"
    Hamid Pezeshk
    مجله پژوهش های اماری ایران, Vol. 1, No 2, 1732

Conference Paper

1. "Detecting genome-wide Copy Number Variation from Next Generation Sequencing data"
   Seyyed Amir Malek Pour, Hamid Pezeshk, Mehdi Sadeghi
   13th Iranian Statistics Conference, 2016
2. "A Note on the Parrondos Paradox"
   N. Ejlali, Hamid Pezeshk, M. Sadeghi
   Tenth Seminar on Stochastic Processes, 2015
3. "A method based on Birth - death process for simulating the epidemic spread of disease in a community"
   Fatemeh Movahedi, Changiz Eslahchi, Hamid Pezeshk
   12th iranian statistical conference, 2014
4. "A Hybrid Statistical Measure for Biological Seqence Comparison"
   Fatemeh Falahdoost, Hamid Pezeshk
   12th iranian statistical conference, 2014
5. "Boosting accuracy of hidden Markov models in protein structure prediction by categorizing amino acids solvent accessibility"
   Seyed Amir Malekpour, Hamid Pezeshk, Mehdi Sadeghi, Changiz Eslahchi
   12th iranian statistical conference, 2014
6. "Generalized Viterbi Algorithm Based on Spatial Statistics"
   Hamid Pezeshk, Vahid Rezaietabar
   12th iranian statistical conference, 2014
7. "A Monte Carlo Markov Chain Method in An Optimization Probelem"
   Hamid Pezeshk
   The 44th Annual Iranian Mathematics Conference, 2013
8. "A MONTE CARLO MARKOV CHAIN METHOD IN AN OPTIMIZATION PROBLEM"
   Maryam Bideli, Hamid Pezeshk
   the 44 th annual Iranian Mathematics Conference, 2013
9. "Sample Size determination Using Shannon and Lindley Information for Difference between two independent binomial proportions."
   Mohammad Ahmadi, Hamid Pezeshk
   13th Iranian Statistics Conference, 2016
10. "Tenth Seminar on Stochastic Processes"
    Mohsen Motevazeh, Hamid Pezeshk
    Hidden Markov model combining bilateral and matched filters moment to identify gene marke, 2015
11. "A Measure for Comparison of Biological Sequences, based on a Markov Model"
    Hamid Pezeshk
    The 9th Seminar on Probability and Stochastic Processes, 2013
12. "A Hidden Markov Model for Misclassified States: A Simulation Study"
    Hamid Pezeshk
    The 9th Seminar on Probability and Stochastic Processes, 2013
13. "An Optimization of the Utility of a Clinical Trial"
    Hamid Pezeshk
    The 9th Seminar on Probability and Stochastic Processes, 2013