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Mohammad Ganjtabesh

Professor

Update: 2026-09-23

Mohammad Ganjtabesh

دانشکده ریاضی، آمار و علوم کامپیوتر / گروه آموزشی علوم کامپیوتر

Journal Paper

  1. "Competition and cooperation of assembly sequences in recurrent neural networks"
    Tristan Manfred Stober, Andrew Lehr, Arash Nikzad, Mohammad Ganjtabesh, Marianne Fyhn, Arvind Kumar
    PLoS Computational Biology, Vol. 21, No 9, 2025
  2. "Meta-learning in spiking neural networks with reward-modulated STDP"
    Arsham Gholamzadeh Khoee, Alireza Javaheri, Saeed Reza Kheradpisheh, Mohammad Ganjtabesh
    NEUROCOMPUTING, Vol. 600, No 1, 2024
  3. "Bioplausible Unsupervised Delay Learning for Extracting Spatiotemporal Features in Spiking Neural Networks"
    Alireza Nadafian Neghabi, Mohammad Ganjtabesh
    NEURAL COMPUTATION, Vol. 36, No 7, pp.1-21, 2024
  4. "Accelerating spiking neural network simulations with PymoNNto and PymoNNtorch"
    Marius Vieth, Ali Rahimi, Ashena Gorgan Mohammadi, Jochen Triesch, Mohammad Ganjtabesh
    Frontiers in Neuroinformatics, Vol. 18, No 1331220, 2024
  5. "On computational models of theory of mind and the imitative reinforcement learning in spiking neural networks"
    Ashena Gorgan Mohammadi, Mohammad Ganjtabesh
    Scientific Reports, Vol. 14, No 1, 2024
  6. "Top-Down modulated model for object recognition in different categorization levels"
    Fatemeh Sharifizadeh, Mohammad Ganjtabesh, Abbas Nouzari Dalini
    International Journal of Bio-Inspired Computation, Vol. 18, No 1, 2021
  7. "Bio-inspired digit recognition using reward-modulated spike-timing-dependent plasticity in deep convolutional networks"
    Milad Mozafari, Mohammad Ganjtabesh, Abbas Nouzari Dalini, Simon Thorpe, Timothee Masquelier
    PATTERN RECOGNITION, Vol. 94, No 1, pp.87-95, 2019
  8. "SpykeTorch: Efficient Simulation of Convolutional Spiking Neural Networks With at Most One Spike per Neuron"
    Milad Mozafari, Mohammad Ganjtabesh, Abbas Nouzari Dalini, Timothee Masquelier
    Frontiers in Neuroscience, Vol. 13, No 1, 2019
  9. "First-Spike-Based Visual Categorization Using Reward-Modulated STDP"
    Milad Mozafari, Saeed Reza Kheradpisheh, Timothee Masquelier, Abbas Nouzari Dalini, Mohammad Ganjtabesh
    IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, Vol. 29, No 12, pp.6178-6190, 2018
  10. "STDP-based spiking deep convolutional neural networks for object recognition"
    Saeed Reza Kheradpisheh, Mohammad Ganjtabesh, Timothee Masquelier, Simon Thorpe
    NEURAL NETWORKS, Vol. 99, No 1, pp.56-67, 2018
  11. "Evaluating the quality of SHAPE data simulated by k-mers for RNA structure prediction"
    Soheila Montaseri, فاطمه زارع میرک اباد , Mohammad Ganjtabesh
    Journal of Bioinformatics and Computational Biology, Vol. 15, No 6, 2017
  12. "RNA Secondary Structure Prediction Using Genetic Algorithm"
    Mohammad Ganjtabesh, Milad Chenaghloo, Abbas Nouzari Dalini
    Bioinformatics and Biocomputational Research, Vol. 1, No 2, pp.59-62, 2017
  13. "Object Categorization in Finer Levels Relies More on Higher Spatial Frequencies and Takes Longer"
    Matin Najar Ashtiani, Saeed Reza Kheradpisheh, Timothee Masquelier, Mohammad Ganjtabesh
    Frontiers in Psychology, Vol. 8, No 1, 2017
  14. "Improving protein complex prediction by reconstructing a high-confidence protein-protein interaction network of Escherichia coli from different physical interaction data sources"
    Shirin Taghipour, Peyman Zarrineh, Mohammad Ganjtabesh, Abbas Nouzari Dalini
    BMC BIOINFORMATICS, Vol. 18, No 1, 2017
  15. "Evolutionary Algorithm for RNA Secondary Structure Prediction Based on Simulated SHAPE Data"
    Soheila Montaseri, Mohammad Ganjtabesh, فاطمه زارع میرک اباد
    PLoS One, Vol. 11, No 11, 2016
  16. "Deep Networks Can Resemble Human Feed-forward Vision in Invariant Object Recognition"
    Saeed Reza Kheradpisheh, Masoud Ghodrati, Mohammad Ganjtabesh, Timothee Masquelier
    Scientific Reports, Vol. 6, No 1, 2016
  17. "Bio-inspired unsupervised learning of visual features leads to robust invariant object recognition"
    Saeed Reza Kheradpisheh, Mohammad Ganjtabesh, Timothee Masquelier
    NEUROCOMPUTING, Vol. 205, No 1, pp.382-392, 2016
  18. "Humans and Deep Networks Largely Agree on Which Kinds of Variation Make Object Recognition Harder"
    Saeed Reza Kheradpisheh, Masoud Ghodrati, Mohammad Ganjtabesh, Timothee Masquelier
    Frontiers in Computational Neuroscience, Vol. 10, No 1, 2016
  19. "An Analytical RNA Secondary Structure Benchmark for the RNA Inverse Folding Problem"
    Javad Mohammadzadeh, Mohammad Ganjtabesh, Abbas Nouzari Dalini
    Current Bioinformatics, Vol. 11, No 5, pp.571-577, 2016
  20. "ERD: a fast and reliable tool for RNA design including constraints"
    Ali Esmaili-taheri, Mohammad Ganjtabesh
    BMC BIOINFORMATICS, Vol. 16, No 1, pp.1-11, 2015
  21. "Relation Between RNA Sequences, Structures, and Shapes via Variation Networks"
    Javad Mohammadzadeh, Mohammad Ganjtabesh, Abbas Nouzari Dalini
    Iranian Journal of Biotechnology, Vol. 12, No 3, pp.58-72, 2014
  22. "Using temperature effects to predict the interactions between two RNAs"
    Mohammad Ganjtabesh, Soheila Montaseri, فاطمه زارع میرک اباد
    JOURNAL OF THEORETICAL BIOLOGY, Vol. 364, pp.98-102, 2014
  23. "Topological Properties of RNA Variation Networks over the Space of RNA Shapes"
    Javad Mohammadzadeh, Mohammad Ganjtabesh, Abbas Nouzari Dalini
    MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY, Vol. 2, No 72, pp.501-518, 2014
  24. "Mixture of feature specified experts"
    Saeid Reza Kheradpisheh, Fatemeh Sharifizadeh, Abbas Nouzari Dalini, Mohammad Ganjtabesh, Reza Ebrahimpour
    Information Fusion, Vol. 20, No 1, 2014
  25. "Evolutionary solution for the RNA design problem"
    Ali Esmaili-taheri, Mohammad Ganjtabesh, Morteza Mohammad Nouri
    BIOINFORMATICS, Vol. 30, No 9, pp.1250-1258, 2014
  26. "An Evidence-Based Combining Classifier for Brain Signal Analysis"
    Saeid Reza Kheradpisheh, Abbas Nouzari Dalini, Reza Ebrahimpour, Mohammad Ganjtabesh
    PLoS One, Vol. 9, No 1, pp.1-10, 2014
  27. "Genetic algorithm solution for partial digest problem"
    Hayedeh Ahrabiyan, Mohammad Ganjtabesh, Abbas Nouzari Dalini, Zahra Razaghi Moghadam Kashani
    International Journal of Bioinformatics Research and Applications, Vol. 6, No 9, pp.584-594, 2013
  28. "Inverse RNA Folding Solution Based on Multi-Objective Genetic Algorithm and Gibbs Sampling Method"
    Mohammad Ganjtabesh, فاطمه زارع میرک اباد, Abbas Nouzari Dalini
    EXCLI Journal, Vol. 12, No 6, pp.546-555, 2013
  29. "Genetic algorithm solution for double digest problem"
    Mohammad Ganjtabesh, Hayedeh Ahrabiyan, Abbas Nouzari Dalini, Zahra Razaghi Moghadam Kashani
    Bioinformation, Vol. 8, No 10, pp.453-456, 2012
  30. "A fast algorithm for the partial digest problem"
    Reza Nadimi , Hasan Salehi Fateh Abadi, Mohammad Ganjtabesh
    JAPAN JOURNAL OF INDUSTRIAL AND APPLIED MATHEMATICS, Vol. 28, No 2, pp.315-325, 2011
  31. "A Molecular Algorithm for Longest Path Problem"
    Hayedeh Ahrabiyan, Mohammad Ganjtabesh, Abbas Nouzari Dalini
    International Journal of Computer Information Systems, Vol. 3, No 1, pp.306-313, 2011
  32. "Enumerating the Number of RNA Structures Including Pseudoknots of any Topology"
    Mohammad Ganjtabesh, Jean Marc Steyaert
    MATCH, Vol. 66, No 1, pp.399-414, 2011
  33. "Molecular Solution for Double and Partial Digest Problems in Polynomial Time"
    Hayedeh Ahrabiyan, Mohammad Ganjtabesh, Abbas Nouzari Dalini
    COMPUTING AND INFORMATICS, Vol. 58, No 5, pp.599-618, 2009
  34. "Predictive Processing in Brain Cortical Columns Using Spiking Neural Networks"
    Ali Rahimi Kolishomi, Mohammad Ganjtabesh
    Computing Science Journal, Vol. 9, No 4, pp.3-11, 2025
  35. "NeoCortex and Its Role in Artificial Intelligence"
    Ashena Gorgan Mohammadi, Mohammad Ganjtabesh
    Computing Science Journal, Vol. پاییز 1401, No 26, pp.3-11, 2022
  36. "Computational modeling of theory of mind: from observation to learning"
    Ashena Gorgan Mohammadi, Mohammad Ganjtabesh
    Computing Science Journal, Vol. 6, No 20, pp.3-11, 2021
  37. "Computational modeling of object recognition in visual cortex using spiking neural networks"
    Mohammad Ganjtabesh
    Computing Science Journal, Vol. 5, No 18, pp.3-11, 2020
  38. "Computational Methods for RNA Secondary Structure Prediction"
    Mohammad Ganjtabesh
    Biological Science Promotion, Vol. 2, No 1, 2019
  39. "Motion recognition modeling using synaptic delays"
    Mohammad Saleh Vahdatpour, Mohammad Ganjtabesh
    Computer Report, Vol. 1, No 237, 2018
  40. "The review on computer brain interfaces"
    Saeed Reza Kheradpisheh, Abbas Nouzari Dalini, Mohammad Ganjtabesh
    Computing Science Journal, Vol. 3, No 1, pp.17-29, 2017

Conference Paper

  1. "Avid: A Variational Inference Deliberation For Meta-Learning"
    Alireza Javaheri, Saeed Reza Kheradpisheh, Hadi Farahani, Arsham Gholamzadeh Khoee, Mohammad Ganjtabesh
    2022 12th International Conference on Computer and Knowledge Engineering (ICCKE), 2022
  2. "Top-Down Modulated Model for Object Recognition in Different Categorization Levels"
    Fatemeh Sharifizadeh, Mohammad Ganjtabesh, Abbas Nouzari Dalini
    Two-Day Symposium on Theoretical and Computational Neuroscience, 2018
  3. "RNA Secondary Structure: the inverse folding problem"
    Mohammad Ganjtabesh
    The 7th Bioinformatics Conference of Iran, 2018
  4. "Learning Visual Features With STDP in a Spiking Deep Neural Network"
    Saeed Reza Kheradpisheh, Mohammad Ganjtabesh, Simon Thorpe, Timothee Masquelier
    Bernstein Conference 2016, 2016
  5. "Investigating the relation between frequency bands and objects categorization levels"
    Saeed Reza Kheradpisheh, Matin Najar Ashtiani, Mohammad Ganjtabesh
    4th Neuroscience Congress 2015, 2015
  6. "RNA Structure Prediction: The Inverse Problem"
    Mohammad Ganjtabesh
    Workshop on Structural Bioinformatics, 2014
  7. "An Evolutionry algorithm to predict RNA-RNA Iteraction"
    Soheila Montaseri, فاطمه زارع میرک اباد, Mohammad Ganjtabesh
    Fifth Iranian Conference on Bioinformatics, 2014
  8. "Analysis of Result of Epigenetic Post-Translational Histone Modifications"
    Mostafa Arbab-sadeghi, Abbas Nouzari Dalini, Mohammad Ganjtabesh
    Fifth Iranian Conference on Bioinformatics, 2014
  9. "An Optimization Approach to Solve the Inverse RNA Folding Problem"
    Mohammad Ganjtabesh, سیدشهریار عرب, سیده مارال ضیایی
    2th International Conference on Operation Research and Optimization, 2013
  10. "MSS-RNA: Make a Sequence for a Given RNA Secondary Structure based on Genetic Algorithm and Gibbs Sampling Method"
    Mohammad Ganjtabesh, Hayedeh Ahrabiyan, Abbas Nouzari Dalini, فاطمه زارع میرک اباد
    International Conference on Operations Research and Optimization, 2011
  11. "Enumerating the number of RNA structures"
    Mohammad Ganjtabesh, آرمین مربی, Jean-Marc Steyaert
    Journees ARENA (Structures et fonctions des ARN, 2007
  12. "RNA secondary structures and their related computational problems"
    Mohammad Ganjtabesh
    Frontiers in Biological Sciences, 2017
  13. "An algorithem ........"
    Mohammad Ganjtabesh
    the 4th national confrence of bioanformatic in Iran, 2012