محیا مهرمحمدی

مقالات علمی چاپ شده در مجلات

1. "Deep generative models in biological sequence and structure analysis and design"
   Fahimeh Palizban, Mohammadmahdi Sarbishegi, Huiqi Qu, Amir Hossein Saeidian, Mahya Mehrmohammadi, Joseph Glessner, Hakon Hakonarson
   BIOTECHNOLOGY ADVANCES, Vol. 93, No 109039, 2026
2. "cfDECOR: a novel approach for estimating cell type contributions to cfDNA based on chromatin accessibility patterns"
   Seyed Saeed Mottaghi, Fahimeh Palizban, Pegah Taklifi, Mahya Mehrmohammadi
   Scientific Reports, Vol. 3, No 50180, 2026
3. "MPCI: A novel metric for quantifying DNA methylation patterns in NGS data"
   naghmeh nazer, Hoda Mohammadzadeh, Mahya Mehrmohammadi
   PLoS Computational Biology, Vol. 22, No 3, 2026
4. "Computational assessment of the relationship between metabolism and histone methylation in cancer cells"
   Mohammadi Rasouli Kouhi, Mahya Mehrmohammadi
   PLoS One, Vol. 21, No 2, 2026
5. "MicroRNA-driven evolutionary pressure in SARS-CoV-2: the role of hsa-miR-6512 in mutational dynamics"
   Pegah Razban, Mahya Mehrmohammadi, mehdi karimi, فاطمه سعادت پور, Ehsan Arefian
   Scientific Reports, Vol. 15, No 1, 2025
6. "Genome-Scale Metabolic Modeling Identifies Synergistic Metabolites that Enhance 5-Fluorouracil Efficacy in Colon Cancer"
   Hasan Rahimi-Tamandegani, Sayed Amir Marashi, Ghazaleh Ghavami, Mahya Mehrmohammadi, سروش سرداری
   IRANIAN BIOMEDICAL JOURNAL, Vol. 29, No 5, 2025
7. "An ultrasensitive method for detection of cell-free RNA"
   Monica Nesselbush, Bogdan Luca, Young-Jun Jeon, Isabel Jabara, Catehrine Meador, Ash Alizadeh, Mohammad S Esfahani, Maximilian Diehn, Emily Hamilton, Henning Stehr, Jacob Chabon, Andrea Garofalo, Mahya Mehrmohammadi
   NATURE, Vol. 10, No 1, 2025
8. "Predicting somatic mutation origins in cell-free DNA by semi-supervised GAN models"
   Fahimeh Palizban, Mohammadmahdi Sarbishegi, Kaveh Kavousi, Mahya Mehrmohammadi
   Heliyon, Vol. 10, No 20, 2024
9. "A novel approach toward optimal workflow selection for DNA methylation biomarker discovery"
   Naghme Nazer, Mohammad Hossein Sepehri, Hoda Mohammadzadeh, Mahya Mehrmohammadi
   BMC BIOINFORMATICS, Vol. 25, No 1, 2024
10. "Integrating chromatin accessibility states in the design of targeted sequencing panels for liquid biopsy"
    Pegah Taklifi, فهیمه پالیزبان, Mahya Mehrmohammadi
    Scientific Reports, Vol. 12, No 1, 2022
11. "Inferring gene expression from cell-free DNA fragmentation profiles"
    Mohammad Shahrokh Esfahani, Emily Hamilton, Mahya Mehrmohammadi, Barzin Nabet, David Kurtz, Chloe Steen, Stephan Alig, Daniel King, Charles Macaulay, Maximilian Diehn, Ash Alizadeh, Andre Schultz, Joanne Soo, Binbin Chen, Jacob Chabon, Monica Nesselbush, Joseph Shroers-Martin, Michael Binkley, Henning Stehr, Brian Sworder, Everet Moding, Angela Hui, Matthew Frank, Chih long Liu, Aaron Newman, James Isbel, Charles Rudin, Bon Li
    NATURE BIOTECHNOLOGY, Vol. 40, No 4, pp.585-597, 2022
12. "Genetic Risk Variants for Class Switching Recombination Defects in Ataxia-Telangiectasia Patients"
    Parisa Amirifar, Mahya Mehrmohammadi, Mohammad Reza Ranjouri, Nima Rezaei, ali saberi, Seyed Mohammad Akrami, Reza Yazdani, Hassan Abolhassani, Asghar Aghamohammadi
    JOURNAL OF CLINICAL IMMUNOLOGY, Vol. 3, No 3, pp.1-13, 2021
13. "A Comparative Overview of Epigenomic Profiling Methods"
    Mahya Mehrmohammadi, [] [], [] [], Naghme Nazer
    Frontiers in cell and developmental biology, Vol. 9, No 9, 2021
14. "The spectrum of ATM gene mutations in Iranian patients with ataxia‐telangiectasia"
    Parisa Amirifard, Salar Pashagzadeh, Mohammad Reza Ranjouri, Reza Yazdani, Martin Lavin, Tannaz Meini Shad, Mahya Mehrmohammadi, Fereshte Salami, Samaneh Delavari, Soraya Moamer, Asghar Aghamohammadi, Seyed Mohammad Akrami, Hassan Abolhassani
    PEDIATRIC ALLERGY AND IMMUNOLOGY, Vol. 80, No 4, 2021
15. "Integrative modelling of tumour DNA methylation quantifies the contribution of metabolism"
    Mahya Mehrmohammadi, Lucas Mentch, Andrew Clark, Jason Locasale
    Nature Communications, Vol. 7, No 7, 2016
16. "Histone Methylation Dynamics and Gene Regulation Occur through the Sensing of One-Carbon Metabolism"
    Samantha Mentch, Mahya Mehrmohammadi, Lei Huang, Xiaojing Liu, Diwaker Gupta, Dwight Mattocks, Paola Gomez Padilla, Gene Ables, Marcas Bammon, Anna Thalacker-Mercer, Sailendra Nichenametla, Jason Locasale
    Cell Metabolism, Vol. 22, No 22, 2015
17. "Characterization of the Usage of the Serine Metabolic Network in Human Cancer"
    Mahya Mehrmohammadi, Xiaojing Liu, Alexander Shestov, Jason Locasale
    Cell Reports, Vol. 9, No 9, 2014

مقالات علمی ارائه شده در همایش‌ها

1. "A novel method identifies liquid biopsy markers based on relative chromatin accessibility"
   Mahya Mehrmohammadi
   American society of human genetics 2021, 2021
2. "Chromatin accessibility patterns in cell-free DNA reveal tumor heterogeneity"
   Mahya Mehrmohammadi
   AACR, 2020