منو
سیدامیر مرعشی

دانشیار

تاریخ به‌روزرسانی: 1404/01/08

سیدامیر مرعشی

دانشکدگان علوم‌ / بیوتکنولوژی‌

مقالات علمی چاپ شده در مجلات

  1. "AmiR-P3: An AI-based microRNA prediction pipeline in plants"
    سبحان عطائی, جعفر احمدی, Sayed Amir Marashi, Ilia Abolhassani
    PLoS One, Vol. 19, No 8, 2024
  2. "SL-scan identifies synthetic lethal interactions in cancer using metabolic networks"
    [] [], Sayed Amir Marashi, Hesam Montazeri
    Scientific Reports, Vol. 13, No 1, 2023
  3. "RT-DOb, a switch gene for the gene pair {Csf1r, Milr1}, can influence the onset of Alzheimer’s disease by regulating communication between mast cell and microglia"
    Nasibeh Khayer, Nasrin Motamed, Sayed Amir Marashi, Fatemeh Goshadrou
    PLoS One, Vol. 18, No 7, 2023
  4. "Glucose Metabolism: Optimizing Regenerative Functionalities of Mesenchymal Stromal Cells Postimplantation"
    Guotian Luo, Pauline Wosinski, Giuliana E. Salazar-Noratto, Morad Bensidhoum, Rena Bizios, Sayed Amir Marashi, Esther Potier, Puyi Sheng, Herve Petite
    Tissue Engineering Part B-Reviews, Vol. 29, No 1, pp.47-61, 2023
  5. "Engineering a Novel Metabolic Pathway for Improving Cellular Malonyl-CoA Levels in Escherichia coli"
    Mohammad Hossein Moteallehi-ardakani, Sedigheh Asad, Sayed Amir Marashi, Sayedeh Afrooz Moghadasi, Parisa Zarparvart
    MOLECULAR BIOTECHNOLOGY, Vol. 1, No 1, 2023
  6. "Genome-scale metabolic model-based engineering of Escherichia coli enhances recombinant single-chain antibody fragment production"
    Aidin Behravan, Atieh Hashemi, Sayed Amir Marashi, Fouladiha Hamideh
    BIOTECHNOLOGY LETTERS, Vol. 44, No 12, 2022
  7. "The assessment of essential genes in the stability of PPI networks using critical node detection problem"
    Javad Rezaei, Fatemeh Zare-Mirakabad, Sayed Amir Marashi, Seyed Ali MirHassani
    AUT Journal of Mathematics and Computing, Vol. 3, No 1, pp.59-76, 2022
  8. "A Constraint-based modeling approach to reach an improved chemically defined minimal medium for recombinant antiEpEX-scFv production by Escherichia coli"
    Aidin Behravan, Atieh Hashemi, Sayed Amir Marashi
    BIOCHEMICAL ENGINEERING JOURNAL, Vol. 179, No 1, 2022
  9. "Critical assessment of genome-scale metabolic models of Arabidopsis thaliana"
    Javad Zamani Amirzakaria, Sayed Amir Marashi, Mohammad Ali Malbo0bi, Tahmineh Lohrasebi, Esmail Forouzan
    Molecular Omics, Vol. 18, No 4, pp.328-335, 2022
  10. "Structural systems pharmacology: A framework for integrating metabolic network and structure-based virtual screening for drug discovery against bacteria"
    Elmira Nazarshodeh, Sayed Amir Marashi, Sajjad Gharaghani
    PLoS One, Vol. 16, No 12, 2021
  11. "In silico prediction of enzymatic reactions catalyzed by acid phosphatases"
    Javad Zamani Amirzakaria, Mohammadali Malboobi, Sayed Amir Marashi, Tahmineh Lohrasebi
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, Vol. 39, No 11, pp.3900-3911, 2021
  12. "EIA-CNDP: An Exact Iterative Algorithm for Critical Node Detection Problem"
    Javad Rezaei, Fatemeh Zare-Mirakabad, Seyed Ali MirHassani, Sayed Amir Marashi
    COMPUTERS & OPERATIONS RESEARCH, Vol. 127, No 1, 2021
  13. "Systematically gap-filling the genome-scale metabolic model of CHO cells"
    Fouladiha Hamideh, Sayed Amir Marashi, Shangzhong Li., Zerong Li, Helen O. Masson, Behrouz Vaziri, Nathan E. Lewis
    BIOTECHNOLOGY LETTERS, Vol. 43, No 1, pp.73-87, 2021
  14. "CAMAMED: a pipeline for composition-aware mapping-based analysis of metagenomic data"
    Mohammad Hossein Norouzi-Beirami, Sayed Amir Marashi, Ali Mohammad Banaei Moghaddam, Kaveh Kavousi
    NAR Genomics and Bioinformatics, Vol. 3, No 1, 2021
  15. "Impact of hfq and sigE on the tolerance of Zymomonas mobilis ZM4 to furfural and acetic acid stresses"
    Hoda Nouri, Hamid Moghimi, Sayed Amir Marashi, Elahe Allahi
    PLoS One, Vol. 15, No 10, 2020
  16. "A system architecture for parallel analysis of flux-balanced metabolic pathways"
    Mona Arabzadeh, Mehdi Sedighi, Morteza Saheb Zamani, Sayed Amir Marashi
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, Vol. 88, No 88, 2020
  17. "Rps27a might act as a controller of microglia activation in triggering neurodegenerative diseases"
    Nasibeh Khayer, Mehdi Mirzaei Azad, Sayed Amir Marashi, maryam jalesi
    PLoS One, Vol. 15, No 9, 2020
  18. "NDDSA: A network- and domain-based method for predicting drug-side effect associations"
    Soheila Shabanimashcool, Sayed Amir Marashi, Sajjad Gharaghani
    INFORMATION PROCESSING & MANAGEMENT, Vol. 57, No 6, 2020
  19. "A Systems-Based Approach for Cyanide Overproduction by Bacillus megaterium for Gold Bioleaching Enhancement"
    Javad Aminian-Dehkordi, سیدمحمد موسوی , Sayed Amir Marashi, آرزو جعفری, Ivan Mijakovic
    FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, Vol. 8, No 1, 2020
  20. "A meta-analysis of gene expression data highlights synaptic dysfunction in the hippocampus of brains with Alzheimer’s disease"
    Saeedeh Hosseinian, Ehsan Arefian, Hassan Rakhsh Khorshid, Mehdi Eivani, Ameneh Rezayof, Hamid Pezeshk, Sayed Amir Marashi
    Scientific Reports, Vol. 11, No 15, 2020
  21. "A reconciliation of genome-scale metabolic network model of Zymomonas mobilis ZM4"
    Hoda Nouri, Fouladiha Hamideh, Hamid Moghimi, Sayed Amir Marashi
    Scientific Reports, Vol. 10, No 1, 2020
  22. "A metabolic network-based approach for developing feeding strategies for CHO cells to increase monoclonal antibody production"
    Fouladiha Hamideh, Sayed Amir Marashi, Fatemeh Torkashvand, فریدون مهبودی , Nathan Lewis, Behrouz Vaziri
    BIOPROCESS AND BIOSYSTEMS ENGINEERING, Vol. 43, No 8, pp.1381-1389, 2020
  23. "Beyond Taxonomic Analysis of Microbiomes: A Functional Approach for Revisiting Microbiome Changes in Colorectal Cancer"
    Mohammad Hossein Norouzi-Beirami, Sayed Amir Marashi, Ali Mohammad Banaei Moghaddam, Kaveh Kavousi
    Frontiers in Microbiology, Vol. 10, No 10, 2020
  24. "Manually curated genome-scale reconstruction of the metabolic network of Bacillus megaterium DSM319"
    Javad Aminian-Dehkordi, Seyyed Mohammad Mousavi, آرزو جعفری, Ivan Mijakovic, Sayed Amir Marashi
    Scientific Reports, Vol. 9, No 1, 2019
  25. "Cancer driver gene discovery in transcriptional regulatory networks using influence maximization approach"
    Majid Rahimi, Babak Teimourpour, Sayed Amir Marashi
    COMPUTERS IN BIOLOGY AND MEDICINE, Vol. 114, No 1, 2019
  26. "Acetic acid uptake rate controls H2 production in Chlamydomonas-bacteria co-cultures"
    Neda Fakhimi, Omid Tavakoli, Sayed Amir Marashi, Hamid Moghimi, Mohammad Reza Mehrnia, Alexandra Dubini, David Gonzalez Ballester
    Algal Research-Biomass Biofuels and Bioproducts, Vol. 42, 2019
  27. "The metabolic network model of primed/naive human embryonic stem cells underlines the importance of oxidation-reduction potential and tryptophan metabolism in primed pluripotency"
    Meisam Yousefi, Sayed Amir Marashi, Ali Sharifi-zarchi, Sara Taleahmad
    Cell and Bioscience, Vol. 9, No 1, 2019
  28. "A genome-scale metabolic network reconstruction of extremely halophilic bacterium Salinibacter ruber"
    Maryam Bagheri, Sayed Amir Marashi, Mohammad Amozegar
    PLoS One, Vol. 14, No 5, 2019
  29. "Three-way interaction model with switching mechanism as an effective strategy for tracing functionally-related genes"
    Nasibeh Khayer, Mehdi Mirzaei Azad, Sayed Amir Marashi, Mostafa Rezaei-tavirani, Fatemeh Goshadrou
    Expert Review of Proteomics, Vol. 16, No 2, pp.161-169, 2018
  30. "Accounting for robustness in modeling signal transduction responses"
    Mohammad Omid Oftadeh, Sayed Amir Marashi
    JOURNAL OF RECEPTORS AND SIGNAL TRANSDUCTION, Vol. 38, pp.442-447, 2018
  31. "Genome-Scale Metabolic Network Models of Bacillus Species Suggest that Model Improvement is Necessary for Biotechnological Applications"
    Tahereh Ghasemi-kahrizsangi, Sayed Amir Marashi, Zhaleh Hosseini
    Iranian Journal of Biotechnology, Vol. 16, No 3, 2018
  32. "A graph-based approach to analyze flux-balanced pathways in metabolic networks"
    Mona Arabzadeh, Morteza Saheb Zamani, Mehdi Sedighi, Sayed Amir Marashi
    BIOSYSTEMS, Vol. 165, No 165, pp.40-51, 2018
  33. "Applications of a metabolic network model of mesenchymal stem cells for controlling cell proliferation and differentiation"
    Hamideh Fouladiha, Sayed Amir Marashi, Mohammd Ali Shokrgozar, Mehdi Farokhi, Amir Atashi
    CYTOTECHNOLOGY, Vol. 70, No 1, 2017
  34. "Three-way interaction model to trace the mechanisms involved in Alzheimer’s disease transgenic mice"
    Nasibeh Khayer, Sayed Amir Marashi, Mahdi Mirzayi, Fatemeh Goshadrou
    PLoS One, Vol. 12, No 9, 2017
  35. "A multiscale agent-based framework integrated with a constraint-based metabolic network model of cancer for simulating avascular tumor growth"
    Mehrdad Ghadiri, Mahshid Heidari, Sayed Amir Marashi, Seyed Hasan Mousavi
    Molecular BioSystems, Vol. 13, No 9, pp.1888-1897, 2017
  36. "A sperm-specific proteome-scale metabolic network model identifies non-glycolytic genes for energy deficiency in asthenozoospermia"
    Arvand Asghari, Sayed Amir Marashi, Naser Ansari Pour
    Systems Biology in Reproductive Medicine, Vol. 63, No 2, pp.100-112, 2017
  37. "Biomedical applications of cell- and tissue-specific metabolic network models"
    Hamideh Fouladiha, Sayed Amir Marashi
    JOURNAL OF BIOMEDICAL INFORMATICS, Vol. 68, No 68, pp.35-49, 2017
  38. "Discovering missing reactions of metabolic networks by using gene co-expression data"
    Zhaleh Hosseini, Sayed Amir Marashi
    Scientific Reports, Vol. 7, No 1, 2017
  39. "In silico prediction of specific pathways that regulate mesangial cell proliferation in IgA nephropathy"
    Elham Sadat Mirfazeli, Sayed Amir Marashi, Shiva Kalantari
    MEDICAL HYPOTHESES, Vol. 97, No 1, pp.38-45, 2016
  40. "Genome-scale reconstruction of the metabolic network in Pseudomonas stutzeri A1501"
    Parizad Babaei, Sayed Amir Marashi, Sedigheh Asad
    Molecular BioSystems, Vol. 11, No 11, pp.3022-3032, 2016
  41. "A kidney-specific genome-scale metabolic network model for analyzing focal segmental glomerulosclerosis"
    Salma Sohrabi-jahromi, Sayed Amir Marashi, Shiva Kalantari
    MAMMALIAN GENOME, Vol. 27, No 2, pp.158-167, 2016
  42. "Indirect role of microRNAs and transcription factors in the regulation of importantcancer genes: A network biology approach"
    Mehdi Ahmadi, Rahim Jafari, Sayed Amir Marashi, Ali Farazmand
    CELLULAR AND MOLECULAR BIOLOGY, Vol. 61, No 6, pp.100-107, 2015
  43. "CAMWI: Detecting Protein Complexes Using Weighted Clustering Coefficient and Weighted Density"
    Amir Lakizadeh, Saeed Jalili, Sayed Amir Marashi
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, Vol. 58, No 1, pp.231-240, 2015
  44. "Reconstruction and validation of a constraint-based metabolic network model for bone marrow-derived mesenchymal stem cells"
    Hamideh Fouladiha, Sayed Amir Marashi, محمدعلی شکرگزار
    CELL PROLIFERATION, Vol. 48, No 8, pp.475-485, 2015
  45. "PCD-GED: Protein complex detection considering PPI dynamics based on time series gene expression data"
    Amir Lakizadeh, Saeed Jalili, Sayed Amir Marashi
    JOURNAL OF THEORETICAL BIOLOGY, Vol. 378, No 1, 2015
  46. "Evidence for the relationship between the regulatory effects of microRNAs and attack robustness of biological networks"
    Mehdi Ahmadi, Rahim Jafari, Sayed Amir Marashi, Ali Farazmand
    COMPUTERS IN BIOLOGY AND MEDICINE, Vol. 63, No 1, 2015
  47. "Can scientific journals be classified based on their citation profiles?"
    Sayed Amir Marashi, Amir Pandi, Hossein Shariati, Hossein Zamani-nasab, Narges Damavandi, Mahshid Heidari, Salma Sohrabi-jahromi, Arvand Asghari, Saba Aslani, Narjes Nakhaee, Mohammad Hossein Moteallehi-ardakani
    SOUTH AFRICAN JOURNAL OF SCIENCE, Vol. 111, pp.2014-147, 2015
  48. "On correlated reaction sets and coupled reaction sets in metabolic networks"
    Sayed Amir Marashi, Zhaleh Hosseini
    Journal of Bioinformatics and Computational Biology, Vol. 13, No 4, 2015
  49. "Hierarchical organization of fluxes in Escherichia coli metabolic network: Using flux coupling analysis for understanding the physiological properties of metabolic genes"
    Zhaleh Hosseini, Sayed Amir Marashi
    GENE, Vol. 561, No 2, pp.199-208, 2015
  50. "FCDECOMP: Decomposition of metabolic networks based on flux coupling relations"
    Abolfazl Rezvan, Sayed Amir Marashi, چنگیز اصلاح چی
    Journal of Bioinformatics and Computational Biology, Vol. 12, No 5, 2014
  51. "Reconstruction of a generic metabolic network model of cancer cells"
    Mahdieh Hadi, Sayed Amir Marashi
    Molecular BioSystems, Vol. 10, No 11, 2014
  52. "Reconstruction of phylogenetic trees of prokaryotes using maximal common intervals"
    Mahdi Heydari, Sayed Amir Marashi, Ruzbeh Tusserkani, Mehdi Sadeghi
    BIOSYSTEMS, Vol. 124, No 1, pp.86-94, 2014
  53. "A mathematical approach to emergent properties of metabolic networks: Partial coupling relations, hyperarcs and flux ratios"
    Sayed Amir Marashi, Mojtaba Tefagh
    JOURNAL OF THEORETICAL BIOLOGY, Vol. 355, pp.185-193, 2014
  54. "Modeling the differences in biochemical capabilities of Pseudomonas species by flux balance analysis: How good are genome-scale metabolic networks at predicting the differences?"
    Parizad Babaei, Tahereh Ghasemi-kahrizsangi, Sayed Amir Marashi
    THE SCIENTIFIC WORLD JOURNAL, Vol. 2014, No 1, 2014
  55. "Finding elementary flux modes in metabolic networks based on flux balance analysis and flux coupling analysis: application to the analysis of Escherichia coli metabolism"
    Shayan Tabe-bordbar, Sayed Amir Marashi
    BIOTECHNOLOGY LETTERS, Vol. 35, No 12, pp.2039-2044, 2013
  56. "Studying the relationship between robustness against mutations in metabolic networks and lifestyle of organisms"
    Sayed Amir Marashi, Hawa Kouhestani, مجید مهدوی
    THE SCIENTIFIC WORLD JOURNAL, Vol. 2013, No 1, 2013
  57. "Evolutionarily conserved motifs and modules in mitochondrial protein-protein interaction networks"
    Mohieddin Jafari, Mehdi Sadeghi, Mehdi Mirzaie, Sayed Amir Marashi, مصطفی رضایی طاویرانی
    MITOCHONDRION, Vol. 13, No 6, pp.668-675, 2013
  58. "Exploring biological processes involved in embryonic stem cell differentiation by analyzing proteomic data"
    Mohieddin Jafari, Mehdi Mirzaie, Mehdi Sadeghi, Sayed Amir Marashi, Mostafa Rezaei-tavirani
    BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, Vol. 1834, No 6, pp.1063-1069, 2013
  59. "IMPACT OF WIKIPEDIA ON CITATION TRENDS"
    Sayed Amir Marashi, Seyed Mohammad Amin Hosseini Nami , Khadijeh Alishah , Mahdieh Hadi , Ali Karimi , Saeedeh Hosseinian , Rouhallah Ramezanifard , Reihaneh Sadat Mirhassani , Zhaleh Hosseini , Zahra Shojaie
    EXCLI Journal, Vol. 12, pp.15-19, 2013
  60. "On flux coupling analysis of metabolic subsystems"
    Sayed Amir Marashi, Laszlo David , Alexander Bockmayr
    JOURNAL OF THEORETICAL BIOLOGY, Vol. 302, pp.62-69, 2012
  61. "Analysis of metabolic subnetworks by flux cone projection"
    Sayed Amir Marashi, Laszlo David , Alexander Bockmayr
    Algorithms for Molecular Biology, Vol. 7, No 1, 2012
  62. "FFCA : a feasibility - based method for flux coupling analysis of metabolic networks"
    Laszlo David , Sayed Amir Marashi, Abdelhalim Larhlimi , Bettina Mieth , Alexander Bockmayr
    BMC BIOINFORMATICS, Vol. 12, 2011
  63. "Flux coupling analysis of metabolic networks is sensitive to missing reactions"
    Sayed Amir Marashi, A Bockmayr
    BIOSYSTEMS, Vol. 103, No 1, pp.57-66, 2011
  64. "بررسی پاسخ های فیزیولوژیکی و مولکولی القاشده در زیر گونه های ایندیکا و ژاپونیکا برنج (Oryza sativa L.) تحت تنش سرما"
    فاطمه سلطانی، رضا معالی امیری، نادین تاپفر، سیدامیر مرعشی، هوشنگ علیزاده
    ژنتیک نوین، نسخه 19، شماره 2، 1403
  65. "استفاده از الگوریتم CTAnalyzer به منظور شناسایی توالی های کاندید pri-microRNA در ژنوم Azadirachta indica"
    سبحان عطائی، جعفر احمدی، سیدامیر مرعشی
    ژنتیک نوین، نسخه 16، شماره 4، 1400
  66. "یک الگوی چند متغیری بیزی برای شبکه های ژنی"
    عبدالله صفری، علی شریفی، حمید پزشک، پیمان نیک چی، سیدامیر مرعشی، چنگیز اصلاح چی
    مجله علوم آماری، نسخه 6، شماره 2، صفحات:187-200، 1391

مقالات علمی ارائه شده در همایش‌ها

  1. "predicting the impact of missense mutations on the protein structure networks: a case study of human phenylalanine hydroxylase and alfa galactosidase"
    Kolsoum Inanloorahatloo, Golnaz Bahramali, Fatemeh Ghandali, Sayed Amir Marashi
    3rd International & 12th Iranian Conference on Bioinformatics Partners with SilicoGene, 2024
  2. "A method to visualize pseudo-potential landscape of high-dimensional Boolean networks"
    Mohammad Taheri Ledari, Sayed Amir Marashi, Kaveh Kavousi
    3rd International & 12th Iranian Conference on Bioinformatics, 2024
  3. "Feature set prioritization of metagenomes for predicting colorectal cancer based on multiple human gut microbiome datasets"
    Zahra Tavakkol-Hamedani, Sayed Amir Marashi, Kaveh Kavousi
    2nd International & 11th Iranian Conference on Bioinformatics, 2023
  4. "DEVELOPMENT OF NEW C4 CROPS"
    Sayed Amir Marashi, Armin Dadras, Ali Mohammad Banaei Moghaddam
    3rd International Cukurova Agriculture and Veterinary Congress, 2021
  5. "Substructure-ADR Association Identification by Statistical Tests"
    Soheila Shabani, Sayed Amir Marashi, Sajjad Gharaghani
    Ninth Iranian Conference on Bioinformatics, 2020
  6. "A metabolic network analysis toward model-driven medium optimization for enhancement of recombinant uricase expression in Escherichia coli"
    Najmeh Seyedkatooli, Sedigheh Asad, Sayed Amir Marashi, Khosro Khajeh
    3rd International & 11th National Biotechnology Congress of Islamic Republic of Iran, 2019
  7. "Effect of Coculturing Ecoli with Chlamydomonas reinhardtii on Biohydrogen Production"
    Neda Fakhimi, Omid Tavakoli, Sayed Amir Marashi, David Gonzalez-ballester, Hamid Moghimi, Mohammad Reza Mehrnia
    2nd International and 10th National Biotechnology Congress of Islamic Republic of Iran, 2017
  8. "Simulation of Avascular Tumor Growth and Metabolism Using In Silico and In Vitro Models: Prediction and Validation of Tumor Growth Pattern in Different Metabolic Conditions"
    Mahshid Heidari, Mahbobe Kabiri, Sayed Amir Marashi
    second international congress on stem cell and regenerative medicine, 2017
  9. "Coculturing Rhizobium with Chlamydomonas reinhardtii improves biohydrogen production"
    Neda Fakhimi, Omid Tavakoli, Sayed Amir Marashi, David Gonzalez Ballester, Hamid Moghimi, Mohammad Reza Mehrnia
    4th hydrogen and fuel cell conference, 2017
  10. "Why some human genes can be deleted from genome? A systems biology approach"
    Sayed Amir Marashi, Mohammad Sababi, Naser Ansari Pour
    Data-Driven Biotechnology, 2017
  11. "On the applications of a metabolic network model of mesenchymal stem cells"
    Hamideh Fouladiha, Sayed Amir Marashi, Mohammad Ali Shokrgozar, Mehdi Farokhi
    41st FEBS Congress, Molecular and Systems Biology for a Better Life, 2016
  12. "On the Applicability of Metabolic Network Models in Biotechnology: Comparing the in silico and in vitro biochemical capabilities of Bacillus subtilis and Bacillus megaterium using genome-scale metabolic network models"
    Tahereh Ghasemi-kahrizsangi, Zhaleh Hosseini, Sayed Amir Marashi
    The Second Iranian International Conference on Systems Biology, 2015
  13. "Asymmetric Distribution of Important Reactions in E. coli Metabolic Network"
    Salma Sohrabi-jahromi, Sayed Amir Marashi
    6th European Conference on Prokaryotic and Fungal Genomics, 2015
  14. "Gap Filling of Metabolic Networks Using Flux Coupling Analysis and Expression Profiles of Metabolic Genes"
    Zhaleh Hosseini, Sayed Amir Marashi
    4th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2015), 2015
  15. "CSC: A new approach to spectral clustering of gene expression data"
    Samira Mali, Mir Mohsen Pedram, Sayed Amir Marashi
    5th Iran Conference on Bioinformatics, 2014
  16. "Genome-Scale Metabolic Network of Pseudomonas stutzeri A1501: Reconstruction and Experimental Validation"
    Parizad Babaei, Sayed Amir Marashi, Sedigheh Asad
    5th Iran Conference on Bioinformatics, 2014
  17. "Computing elementary flux modes based on flux balance analysis"
    Sayed Amir Marashi, Shayan Tabe-bordbar
    Cell Factories and Biosustainability 2013, 2013
  18. "Applications of Genome-Scale Networks in Systems Biology"
    Sayed Amir Marashi
    Data Processing in Postgenomics Era, 2013
  19. "On emergent properties in constraint-based models of metabolic networks"
    Sayed Amir Marashi, مجتبی تفاق
    COBRA2012, 2012
  20. "ارائه نسخه ای جدید از مدل شبکه متابولیکی ژنوم مقیاس سلول های CHO"
    حمیده فولادیها، سیدامیر مرعشی
    سومین کنفرانس زیست شناسی سامانه های ایران، 1396
  21. "اSystems-level modeling for forward and inverse metabolic engineering"
    سیدامیر مرعشی
    سومین کنفرانس زیست شناسی سامانه های ایران، 1396
  22. "مقایسه پروفایل های معنی داری سه تایی در شبکه متابولیکی E.coli با استفاده از تصادفی سازی موازنه جرم"
    فرناز محمدی، سیدامیر مرعشی
    سومین کنفرانس زیست شناسی سامانه های ایران، 1396
  23. "اIn silico prediction of preferred substrate of some HAD-Related Acid Phosphatase of A. thaliana"
    جواد زمانی امیرزکریا، محمد علی ملبوبی، سیدامیر مرعشی، تهمینه لهراسبی
    هفتمین همایش بیوانفورماتیک ایران، 1396
  24. "رویکرد برنامه ریزی خطی صحیح برای مدلسازی و حل مسائل بیوانفورماتیک"
    سیدامیر مرعشی
    هفتمین همایش بیوانفورماتیک ایران، 1396
  25. "مهندسی متابولیک اشریشیاکلای به منظور افزایش غلظت مالونیلکوآ به عنوان متابولیت محدودکننده در مسیر فنیل پروپانوئیدها"
    محمد حسین متالهی، سیدامیر مرعشی، صدیقه اسد
    دومین همایش بین المللی و دهمین همایش ملی بیوتکنولوژی جمهوری اسلامی ایران، 1396
  26. "بررسی ارتباط ویژگی های فیزیولوژیکی و تکاملی ژن های متابولیکی با مکان آنها در گراف سلسله­مراتبی همراهی شارها"
    ژاله حسینی، سیدامیر مرعشی
    هشتمین همایش ملی بیوتکنولوژی، 1392
  27. "بازسازی شبکه متابولیکی سلولهای سرطانی به منظور پیش بینی روابط ژنوتیپ-فنوتیپ از با دیدگاه زیست شناسی سیستمها"
    مهدیه هادی، سیدامیر مرعشی
    سومین کنگره ژنتیک پزشکی ایران، 1392
  28. "استفاده از تئوری نفوذ به منظور بررسی ارتباط میان استواری شبکه های متابولیکی و نحوه زندگی موجودات زنده"
    حوا کوهستانی، سیدامیر مرعشی، مجید مهدوی
    سومین همایش بین المللی دانشجویی بیوتکنولوژی، 1392
  29. "تهیه نسخه ی پیش نویس شبکه متابولیکی ژنوم مقیاس مربوط به باکتری باسیلوس لیکنی فرمیس بر اساس شبکه متابولیکی بازسازی شده باسیلوس سابتیلیس"
    رسول ثقلینی، سیدامیر مرعشی، سیدصفاعلی فاطمی، مهدی صادقی
    سومین همایش بین المللی دانشجویی بیوتکنولوژی، 1392
  30. "ویژگیهای ظاهرشونده در مدلهای مبتنی بر قید شبکه های متابولیکی"
    سیدامیر مرعشی، مجتبی تفاق
    سیستمها مهندسی کنترل و علوم زیستی، 1391
  31. "مقیاس ژنومدر مدل متابولیسم"
    سیدامیر مرعشی
    سیستمهای مهندسی کنترل و علوم زیستی، 1391
  32. "بررسی مقایسه ای دو مفهوم همراهی شارها و همبستگی شارها در شبکه های متابولیکی"
    سیدامیر مرعشی، ژاله حسینی
    چهارمین همایش ملی بیوانفورماتیک ایران، 1391